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A mycologist’s view on the fungi in The Last of Us

A mycologist’s view on the fungi in The Last of Us

The blockbuster TV show The Last of Us has raised the prospect of a devastating fungal pandemic, where humans are infected by a brain controlling Cordyceps fungus. We ask one of our mycologists what fungi we should be worried about.

A brain con­trol­ling fun­gus that has adapt­ed to cli­mate change to infect humans, plung­ing the world into a ter­ri­fy­ing fun­gal pandemic.

The HBO dra­ma The Last of Us is gain­ing a huge audi­ence of fans and presents us with a future where human­i­ty is all but wiped out by a Cordy­ceps fun­gal infection.
Cordy­ceps fun­gi are real. But, rather than humans, they infect insects and manip­u­late the behav­iour of their host to mul­ti­ply and spread.

So, could they mutate and infect humans?

We asked our very own fun­gal expert here at NSW Health Pathol­o­gy, Dr Catri­ona Hal­l­i­day, whose work involves iden­ti­fy­ing fun­gi and devel­op­ing diag­nos­tic tests for fun­gal infections.

A woman sitting at a desk in a laboratory with a microscope in the background.
Mycol­o­gist at NSW Health Pathol­o­gy, Dr Catri­ona Halliday

Catri­ona, have you seen The Last of Us and what do you think of the sci­ence behind it?

“I haven’t watched it yet, but I have had a lot of peo­ple send­ing me links to arti­cles about it, so I am aware of it. I don’t come across Cordy­ceps fun­gi in the lab­o­ra­to­ry because it’s not some­thing which actu­al­ly does cause infec­tions in humans. 
“There are many dif­fer­ent Cordy­ceps species and they cause infec­tions in dif­fer­ent insects. Each species caus­es an infec­tion in a spe­cif­ic host insect. 
“I’ve looked at some amaz­ing footage on YouTube where David Attenborough’s Plan­et Earth shows a Cordy­ceps infect­ing an ant in that colony. I can tell you I won’t be show­ing it to my 10-year-old because he will have nightmares!”

There’s an omi­nous line in that video where Atten­bor­ough explains that the Cordy­ceps fun­gus works to keep each insect species in check, pre­vent­ing any one ani­mal from over­pop­u­lat­ing an area. So, is it far-fetched that we might be next?

“Yes, it is unlike­ly, because that par­tic­u­lar fun­gus just does­n’t cause infec­tions in humans, but it’s an inter­est­ing concept.”

So, what fun­gi do pose a risk and how wor­ried should we be about fun­gal infections?

“The World Health Organ­i­sa­tion (WHO) recent­ly released a Fun­gal Pri­or­i­ty Pathogen List to draw atten­tion to the fun­gus threat and guide research into new fun­gal diag­nos­tics and anti­fun­gal agents. It high­lights 19 fun­gal species that pose the largest threat. The “big four” are:

1. Cryp­to­coc­cus neoformans
2. Can­di­da auris (a fun­gal ‘super­bug’)
3. Aspergillus fumigatus
4. Can­di­da albi­cans (a yeast that is part of our skin, mouth and guts micro­bio­me that is usu­al­ly harm­less but can dis­sem­i­nate and cause life threat­en­ing ill­ness dur­ing immunosuppression)

Fungus growing on a slide
Aspergillus fumi­ga­tus
An enlarged view of fungal spores
Aspergillus fumi­ga­tus under the microscope
White lines of fungi growing on a glass plate
Cryp­to­coc­cus neo­for­mans fungi

“Most fun­gi cause infec­tions in humans with com­pro­mised immune sys­tems although there are some that infect healthy hosts. 
“Fun­gi are every­where, and peo­ple breathe and come into con­tact with them every day with­out get­ting sick thanks to a healthy immune sys­tem. Your body tem­per­a­ture of 37 degrees, your body’s abil­i­ty to get rid of things that you might breathe in – they all help you to avoid get­ting a fun­gal infec­tion. It’s usu­al­ly only peo­ple who’ve got a com­pro­mised immune sys­tem, whether that’s because they’re under­go­ing treat­ment for can­cer, or if they’ve had immuno­sup­pres­sive treat­ment for trans­plants or they may have HIV. Those par­tic­u­lar peo­ple are more like­ly to devel­op a nasty fun­gal infection.
“The most com­mon mould that caus­es infec­tions is Aspergillus fumi­ga­tus. Aspergillus lives very hap­pi­ly in soil, com­posts, and plant debris. Its role is actu­al­ly for degra­da­tion of mate­r­i­al in the envi­ron­ment. They’re very good for the envi­ron­ment and we real­ly need them. But it’s when peo­ple have a com­pro­mised immune sys­tem that fun­gus can cause real­ly hor­ri­ble, nasty infec­tions that are quite life threatening.”

Are these infec­tions hard to diag­nose? Are doc­tors look­ing out for the symptoms?

“I think prob­a­bly fun­gal infec­tions are not the first thing that’s nec­es­sar­i­ly thought of and it might be when a patien­t’s not respond­ing to antibi­otics that then they might do some fur­ther tests and dis­cov­er a fun­gal infection.

“Fun­ni­ly enough, fun­gi weren’t even on anyone’s radar for caus­ing infec­tions till the 1980s. It was only when we had HIV and lots of peo­ple with immuno-com­pro­mis­ing con­di­tions that they were even acknowl­edged as an issue. 
“Fun­gi have only real­ly been rec­og­nized as caus­ing a prob­lem in the last 40 to 50 years, so we’re a long way behind oth­er infec­tious dis­eases, like virus­es, because we’re start­ing a lot later.”

What got you start­ed with Mycol­o­gy – have you always been inter­est­ed in fungi?

“Not at all! In fact, I don’t even eat mush­rooms, I nev­er have. I did a basic sci­ence degree with a major in micro­bi­ol­o­gy, and I think we prob­a­bly had one lec­ture on fun­gi. I went on to do a PhD look­ing at a par­tic­u­lar fun­gus and it was then that a role came up at West­mead. So, I’ve devel­oped PCR tests to diag­nose fun­gal infec­tions. I’ve gone from learn­ing about one par­tic­u­lar fun­gus to learn­ing about a lot more of them and there’s about 200 of them that cause infec­tions in humans.”

*Dr Hal­l­i­day has recent­ly pub­lished the 4th Edi­tion of Descrip­tions of Med­ical Fun­gi, a 350 page book detail­ing updat­ed species, images and tips for identification.

 

Training our future specialist pathologists

NSW Heath Pathology is pleased to welcome 31 new Junior Medical Officers starting their pathology traineeships with us in the 2023 Clinical year.

Pathol­o­gy trainees are the future of our med­ical work­force and a cru­cial part of our organisation. 

There is a short­age of spe­cial­ist pathol­o­gists inter­na­tion­al­ly and across Aus­tralia and we are work­ing with NSW Health and the Roy­al Col­lege of Pathol­o­gists of Aus­trala­sia (RCPA) to recruit, train and retain the next gen­er­a­tion in all disciplines. 

Of our new recruits: 25 will train in Anatom­i­cal Pathol­o­gy; 5 in Micro­bi­ol­o­gy; and 1 in Foren­sic Medicine.

They’ll rotate through our met­ro­pol­i­tan lab­o­ra­to­ries as well as some of our region­al labs in Orange, Wag­ga Wag­ga and Tam­worth, and our Foren­sic Med­i­cine Lid­combe facil­i­ty. This year, we were also pleased to secure fund­ing for a sec­ond trainee posi­tion at Nepean.

 

Pic of three pathology trainees at Forensic Medicine Lidcombe

Three of our new pathol­o­gy trainees on an ori­en­ta­tion vis­it to our Foren­sic Medicine
ser­vice at Lidcombe.The trainees will learn how to nav­i­gate the exhil­a­rat­ing and chal­leng­ing world of diag­nos­tic pathol­o­gy and con­tribute to ongo­ing explo­ration and cat­e­gori­sa­tion of human diseases.

On 8 and 9 Feb­ru­ary 2023 they attend­ed ori­en­ta­tion at the RCPA, a pri­vate pathol­o­gy lab­o­ra­to­ry and the NSW Min­istry of Health. The events were an oppor­tu­ni­ty to build friend­ships and sup­port net­works that will be need­ed in the tough but reward­ing years ahead.

The NSW Pathol­o­gy Train­ing Pro­gram, run by NSW Health Pathol­o­gy, the RCPA and NSW Min­istry of Health, is one of the most rig­or­ous in Aus­tralia. It takes 5 years to qual­i­fy for RCPA fel­low­ship, with a strong empha­sis on aca­d­e­m­ic and prac­ti­cal learning.

NSW Health Pathol­o­gy employs approx­i­mate­ly 120 junior doc­tors each year in trainee/registrar posi­tions across NSW, most­ly in Anatom­i­cal Pathology.

We recent­ly added Res­i­dent Med­ical Offi­cer (RMO) posi­tions to allow junior doc­tors to have a 12-week expe­ri­ence in Anatom­i­cal Pathol­o­gy before they com­mit to a career via the Annu­al Med­ical Recruit­ment process.

 

Anatomical Pathology Training Coordinator Dr Lisa Parker, NSWHP CHief Pathologist and Director of Medical Services Dr Michael Whiley with a JMO.
Our Anatom­i­cal Pathol­o­gy Train­ing Coor­di­na­tor Dr Lisa Park­er and NSWHP Chief Pathol­o­gist and Direc­tor of Med­ical Ser­vices Dr Michael Whiley with Maria Vas­sili, our A/Medical Work­force Team Leader.

 

 

New Microbiology trainees learned from senior trainees at the RCPA orientation on Wednesday 8 February 2023.
Micro­bi­ol­o­gy trainees learned from senior trainees at the RCPA ori­en­ta­tion on Wednes­day 8 Feb­ru­ary 2023.

 

Pathology trainee Brett Fivelman
Pathol­o­gy trainee Brett Fivelman.

 

Pathology trainee Sewon Kim.
Pathol­o­gy trainee Sewon Kim.

 

Forensic Pathology trainee Michael Chang
Our Foren­sic Pathol­o­gy trainee Michael Chang.

 

Chief Pathologist Michael Whiley presenting
Our Chief Pathol­o­gist Dr Michael Whiley pre­sent­ing to trainees at the RCPA ori­en­ta­tion event.

 

What you need to know about the dengue fever outbreak in Singapore

Singapore is experiencing rising numbers of dengue fever, but what does it mean for Australians travelling to the region and could the outbreak spread here?

Sin­ga­pore is on alert as dengue fever num­bers start to rise again, after case num­bers spiked in 2022 and 2020.

The num­ber of dengue cas­es in Sin­ga­pore dur­ing 2022 reached the sec­ond high­est on record.

The Nation­al Envi­ron­ment Agency has warned that there could be anoth­er out­break this year, as the num­ber of cas­es remains high.

In the week end­ing 28 Jan­u­ary 2023, Singapore’s Nation­al Envi­ron­ment Agency report­ed 186 dengue cas­es and there were 274 the pre­vi­ous week.

So what are the impli­ca­tions for Australia?

A man in back t-shirt sits in an office with books and medical specimens on shelves.
Mos­qui­to expert, Cameron Webb

NSW Health Pathol­o­gy med­ical ento­mol­o­gist, Asso­ciate Pro­fes­sor Cameron Webb said there was no risk of the out­break com­ing here as the mos­qui­toes that spread dengue virus­es, espe­cial­ly Aedes aegyp­ti and Aedes albopic­tus, are not found in NSW.

“There are lots of mos­qui­toes here that can spread virus­es of con­cern, such as Mur­ray Val­ley encephali­tis virus, but not dengue,” he said.

A/Prof Webb said the most impor­tant mes­sage is for trav­ellers to Sin­ga­pore to be aware of the need to avoid being bit­ten, par­tic­u­lar­ly dur­ing day­light hours.

“It is impor­tant that Aus­tralians trav­el­ling over­seas make sure they use repel­lent dur­ing the day, as that is when the mos­qui­toes that trans­mit the virus tend to bite – not dur­ing ear­ly morning/evening hours as we are used to here in Australia.”

Mean­while, in Sin­ga­pore the Nation­al Envi­ron­ment Agency says it is car­ry­ing out pre­ven­tive mea­sures to fur­ther slow dengue transmission.

Sentinel chickens provide early warning on deadly diseases

Dotted around a handful of backyards and on farms in regional New South Wales are special flocks of chickens that play a key role in helping NSW Health Pathology protect the community from serious diseases.

They are known as ‘sen­tinel chick­ens’ and since the 1970s they have been used to give us an ear­ly warn­ing about the pres­ence of poten­tial­ly dead­ly virus­es such as Mur­ray Val­ley encephali­tis virus, Kun­jin virus and Japan­ese encephali­tis virus, which are spread via mosquitoes.

So how does the sur­veil­lance pro­gram work?

Dur­ing the wet and warmer months of the year blood sam­ples are tak­en from the chick­ens once a week and sent to NSW Health Pathology’s Insti­tute of Clin­i­cal Pathol­o­gy and Med­ical Research (ICPMR) labs at West­mead for testing.

 

Two women in hi-vis shirts hold a chicken on a table.
Pub­lic health offi­cers from Grif­fith Coun­cil take a blood sam­ple from a chicken.

The head of the Arbovirus Emerg­ing Dis­eases Unit, Prin­ci­pal Sci­en­tist Asso­ciate Pro­fes­sor Lin­da Hue­ston, explains why chick­ens are used and what her team is look­ing for when the blood sam­ples arrive.

“Most of the virus­es of inter­est – Mur­ray Val­ley encephali­tis virus, Kun­jin virus, and now Japan­ese encephali­tis virus (JEV) – are cir­cu­lat­ing in wild bird pop­u­la­tions,” she said.

“But chick­ens are much eas­i­er to catch and to test than wild birds.”

“In the 1990’s I devel­oped a series of high­ly spe­cif­ic defined epi­tope block­ing ELISA tests for Mur­ray Val­ley encephali­tis virus, Kun­jin virus and for JEV. These tests are not just high­ly spe­cif­ic they can be used to detect anti­body in any species. This allows us to com­pare results between animals.”

 

A woman wearing a mask, protective glasses and a protective gown sits in a lab holding containers of pink liquid.
Lin­da Hue­ston in the West­mead lab where sam­ples from the chick­ens are sent.

Health author­i­ties are also test­ing mos­qui­to pop­u­la­tions for the same virus­es, but A/Prof Hue­ston insists the infor­ma­tion from test­ing the chick­ens is vital.
“Mos­qui­toes are trapped one night a week and test­ed, but that doesn’t give you an idea of how much virus is there, or if there is enough virus to cause trans­mis­sion, which is where the chick­ens come in” she said.

“We esti­mate chick­ens are bit­ten by mozzies up to 1,000 times a night, and every time a mos­qui­to bites it injects sali­va, and the virus is in that saliva.”

“So, it’s a num­bers game. With 15 chick­ens in each flock, the chances of find­ing the virus increase. As the num­ber of pos­i­tive birds in the flock increase so does the risk of virus spillover to humans.”

A/Prof Hue­ston said expe­ri­ence shows that a pos­i­tive test in a chick­en gives health author­i­ties about two weeks’ notice before the virus spreads to the human pop­u­la­tion, enough time to imple­ment pub­lic health mea­sures in the area.

The virus­es don’t harm the birds and all sen­tinel chick­en flocks are sub­ject to ani­mal ethics com­mit­tee approvals, as well as reg­u­lar checks by vet­eri­nar­i­ans to ensure they’re prop­er­ly housed and well cared for.

“They have to be in peak con­di­tion to be the best sen­tinels for the pro­gram, so it’s in everyone’s best inter­est to make sure the birds are healthy and hap­py,” A/Prof Hue­ston said.

Want to see more? One of our flocks in Grif­fith in the Rive­ri­na was vis­it­ed in Jan­u­ary 2023 by British YouTu­ber Tom Scott who made this awe­some video.

Celebrating the inspiring winners of our 2022 NSW Health Pathology Awards

We’re proud to share the latest edition of NSW Health Pathology’s Compass magazine – out now.

It is a bumper spe­cial edi­tion cel­e­brat­ing the inspir­ing win­ners of our NSW Health Pathol­o­gy Awards – the peo­ple who make our organ­i­sa­tion great and go above and beyond for the peo­ple of NSW.

Go behind the scenes and learn about some of the amaz­ing pub­lic pathol­o­gy and foren­sic med­i­cine and sci­ence work we do every day. We care. We con­nect. We pioneer.

It also gives us a peek inside the event with some of our high­light pho­tos included.

Please take some time to read, share and cel­e­brate our pub­li­ca­tion with your friends, fam­i­ly and col­leagues, and join the rest of NSW Health Pathol­o­gy in once again con­grat­u­lat­ing our recent NSW Health Pathol­o­gy Award winners.

Read our mag­a­zine in flip­book for­mat here.

Mag1

Australia Day honours for leading genetic pathologist Professor Edwin Kirk

A massive congratulations to our very own Professor Edwin Kirk, appointed a Member of the Order of Australia (AM) in the 2023 Australia Day Honours List.

Pro­fes­sor Edwin Kirk was sneak­ing in a quick check of his work emails while on a fam­i­ly hol­i­day when he found out he was to be appoint­ed a Mem­ber of the Order of Aus­tralia (AM) in the 2023 Aus­tralia Day Hon­ours List.

He said he was star­tled and delight­ed in equal mea­sure at the honour.

“I had felt a bit guilty about check­ing my email – but when I saw that par­tic­u­lar mes­sage, I was very glad that I had!” he said.

Pro­fes­sor Kirk works in the NSW Health Pathol­o­gy Genomics Lab­o­ra­to­ry at Rand­wick and is both a clin­i­cal geneti­cist and genet­ic pathol­o­gist – a rare combination.

He has been recog­nised for his sig­nif­i­cant ser­vice to genet­ic pathol­o­gy and clin­i­cal genet­ics, and to med­ical research.

Among his many achieve­ments and appoint­ments, Pro­fes­sor Kirk is cur­rent­ly co-leader in a ground-break­ing nation­al repro­duc­tive genet­ic car­ri­er screen­ing study known as Mackenzie’s Mis­sion.

In recent years, thou­sands of Aus­tralian cou­ples tak­ing part in the study have been screened for about 750 severe, child­hood-onset genet­ic con­di­tions, giv­ing them infor­ma­tion about their like­li­hood of hav­ing a child with any of these genet­ic conditions.

Prof Kirk cred­its Rachael and Jon­ny Casel­la for their tire­less advo­ca­cy in mak­ing the project pos­si­ble. Macken­zie, after whom the project is named, was their daughter.

“When we start­ed Mackenzie’s Mis­sion, the goal was to bring car­ri­er screen­ing to all Aus­tralian cou­ples who wish to access it, free of charge,” Prof Kirk said.

“That remains the goal, and we are still work­ing towards it.”

Prof Kirk said he jumped at the chance to work in genet­ics after com­plet­ing his ini­tial clin­i­cal train­ing in paediatrics.

“I noticed that wher­ev­er I was work­ing, any time there was an inter­est­ing or chal­leng­ing diag­nos­tic prob­lem, the geneti­cists were called in,” he said.

“This was in the ear­ly to mid 1990s and even then it was obvi­ous to an out­sider that the pace of dis­cov­ery in genet­ics was rapid and accel­er­at­ing. It seemed like a field full of possibilities.”

Prof Kirk has authored or co-authored more than 125 sci­en­tif­ic pub­li­ca­tions dur­ing his two-decade long career in genetics.

In 2020 he pub­lished a book “The Genes That Make Us: human sto­ries from a rev­o­lu­tion in med­i­cine”, in which he shares expe­ri­ences and anec­dotes from his career, while recount­ing the his­to­ry of genet­ic med­i­cine and explor­ing its future potential.

“Our abil­i­ty to make diag­noses in chil­dren with rare genet­ic con­di­tions is dra­mat­i­cal­ly bet­ter than when I start­ed; this is very reward­ing, both in the lab and at the bed­side,” he said.

“A diag­no­sis can have a very large, pos­i­tive impact for a fam­i­ly in all sorts of ways.”

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